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Protokolldatei nicht gefunden Bibtex

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Protokolldatei nicht gefunden Bibtex

beim Versuch, meine Bibtex-Datei zu kompilieren, werden nur bestimmte Referenzen angezeigt und nummeriert. Bei vielen anderen jedoch nicht, und wenn ich den Bibtex-Befehl verwende, erhalte ich die Meldung „Fehler – Protokolldatei nicht gefunden!“. Ich habe \cite{} für alle Referenzen verwendet, wobei einige als Fragezeichen angezeigt werden, obwohl sie in der Bibtex-Datei vorhanden sind.

Bitte sehen Sie sich meine BIB-Datei an.

@article{cargill1999characterization,
  title={Characterization of single-nucleotide polymorphisms in coding regions of human genes},
  author={Cargill, Michele and Altshuler, David and Ireland, James and Sklar, Pamela and Ardlie, Kristin and Patil, Nila and Lane, Charles R and Lim, Esther P and Kalyanaraman, Nilesh and Nemesh, James and others},
  journal={Nature genetics},
  volume={22},
  number={3},
  pages={231--238},
  year={1999},
  publisher={Nature Publishing Group}
}

@article{collins1998dna,
  title={A DNA polymorphism discovery resource for research on human genetic variation},
  author={Collins, Francis S and Brooks, Lisa D and Chakravarti, Aravinda},
  journal={Genome research},
  volume={8},
  number={12},
  pages={1229--1231},
  year={1998},
  publisher={Cold Spring Harbor Lab}
}

@article{frazer2009human,
  title={Human genetic variation and its contribution to complex traits},
  author={Frazer, Kelly A and Murray, Sarah S and Schork, Nicholas J and Topol, Eric J},
  journal={Nature Reviews Genetics},
  volume={10},
  number={4},
  pages={241--251},
  year={2009},
  publisher={Nature Publishing Group}
}

@article{10002010map,
  title={A map of human genome variation from population-scale sequencing},
  author={1000 Genomes Project Consortium and others},
  journal={Nature},
  volume={467},
  number={7319},
  pages={1061--1073},
  year={2010},
  publisher={Nature Publishing Group}
}

@article{smigielski2000dbsnp,
  title={dbSNP: a database of single nucleotide polymorphisms},
  author={Smigielski, Elizabeth M and Sirotkin, Karl and Ward, Minghong and Sherry, Stephen T},
  journal={Nucleic Acids Research},
  volume={28},
  number={1},
  pages={352--355},
  year={2000},
  publisher={Oxford Univ Press}
}

@article{fredman2002hgvbase,
  title={HGVbase: a human sequence variation database emphasizing data quality and a broad spectrum of data sources},
  author={Fredman, D and Siegfried, Marianne and Yuan, Yan P. and Bork, Peer and Lehv{\"a}slaiho, Heikki and Brookes, Anthony J},
  journal={Nucleic acids research},
  volume={30},
  number={1},
  pages={387--391},
  year={2002},
  publisher={Oxford Univ Press}
}

@article{hamosh2005online,
  title={Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders},
  author={Hamosh, Ada and Scott, Alan F and Amberger, Joanna S and Bocchini, Carol A and McKusick, Victor A},
  journal={Nucleic acids research},
  volume={33},
  number={suppl 1},
  pages={D514--D517},
  year={2005},
  publisher={Oxford Univ Press}
}

@article{becker2004genetic,
  title={The genetic association database},
  author={Becker, Kevin G and Barnes, Kathleen C and Bright, Tiffani J and Wang, S Alex},
  journal={Nature genetics},
  volume={36},
  number={5},
  pages={431--432},
  year={2004},
  publisher={Nature Publishing Group}
}

@article{cooper1998human,
  title={The human gene mutation database},
  author={Cooper, David N and Ball, Edward V and Krawczak, Michael},
  journal={Nucleic acids research},
  volume={26},
  number={1},
  pages={285--287},
  year={1998},
  publisher={Oxford Univ Press}
}

@article{karolchik2003ucsc,
  title={The UCSC genome browser database},
  author={Karolchik, Donna and Baertsch, Robert and Diekhans, Mark and Furey, Terrence S. and Hinrichs, A and Lu, YT and Roskin, Krishna M. and Schwartz, M and Sugnet, Charles W. and Thomas, Daryl J and others},
  journal={Nucleic acids research},
  volume={31},
  number={1},
  pages={51--54},
  year={2003},
  publisher={Oxford Univ Press}
}

@article{adzhubei2010method,
  title={A method and server for predicting damaging missense mutations},
  author={Adzhubei, Ivan A and Schmidt, Steffen and Peshkin, Leonid and Ramensky, Vasily E and Gerasimova, Anna and Bork, Peer and Kondrashov, Alexey S and Sunyaev, Shamil R},
  journal={Nature methods},
  volume={7},
  number={4},
  pages={248--249},
  year={2010},
  publisher={Nature Publishing Group}
}

@article{ng2003sift,
  title={SIFT: Predicting amino acid changes that affect protein function},
  author={Ng, Pauline C and Henikoff, Steven},
  journal={Nucleic acids research},
  volume={31},
  number={13},
  pages={3812--3814},
  year={2003},
  publisher={Oxford Univ Press}
}

@article{kumar2012evolutionary,
  title={Evolutionary diagnosis method for variants in personal exomes},
  author={Kumar, Sudhir and Sanderford, Maxwell and Gray, Vanessa E and Ye, Jieping and Liu, Li},
  journal={Nature methods},
  volume={9},
  number={9},
  pages={855--856},
  year={2012},
  publisher={Nature Publishing Group}
}

@article{hicks2011prediction,
  title={Prediction of missense mutation functionality depends on both the algorithm and sequence alignment employed},
  author={Hicks, Stephanie and Wheeler, David A and Plon, Sharon E and Kimmel, Marek},
  journal={Human mutation},
  volume={32},
  number={6},
  pages={661--668},
  year={2011},
  publisher={Wiley Online Library}
}

@article{lopes2012combined,
  title={A combined functional annotation score for non-synonymous variants},
  author={Lopes, Margarida C and Joyce, Chris and Ritchie, Graham RS and John, Sally L and Cunningham, Fiona and Asimit, Jennifer and Zeggini, Eleftheria},
  journal={Human heredity},
  volume={73},
  number={1},
  pages={47--51},
  year={2012},
  publisher={Karger Publishers}
}

@article{capriotti2011improving,
  title={Improving the prediction of disease-related variants using protein three-dimensional structure},
  author={Capriotti, Emidio and Altman, Russ B},
  journal={BMC bioinformatics},
  volume={12},
  number={Suppl 4},
  pages={S3},
  year={2011},
  publisher={BioMed Central Ltd}
}

@article{bromberg2007snap,
  title={SNAP: predict effect of non-synonymous polymorphisms on function},
  author={Bromberg, Yana and Rost, Burkhard},
  journal={Nucleic acids research},
  volume={35},
  number={11},
  pages={3823--3835},
  year={2007},
  publisher={Oxford Univ Press}
}

@article{bromberg2007snap,
  title={SNAP: predict effect of non-synonymous polymorphisms on function},
  author={Bromberg, Yana and Rost, Burkhard},
  journal={Nucleic acids research},
  volume={35},
  number={11},
  pages={3823--3835},
  year={2007},
  publisher={Oxford Univ Press}
}

@article{collins2001implications,
  title={Implications of the Human Genome Project for medical science},
  author={Collins, Francis S and McKusick, Victor A},
  journal={Jama},
  volume={285},
  number={5},
  pages={540--544},
  year={2001},
  publisher={American Medical Association}
}

@article{lyons2009sail,
  title={The SAIL databank: linking multiple health and social care datasets},
  author={Lyons, Ronan A and Jones, Kerina H and John, Gareth and Brooks, Caroline J and Verplancke, Jean-Philippe and Ford, David V and Brown, Ginevra and Leake, Ken},
  journal={BMC Medical Informatics and Decision Making},
  volume={9},
  number={1},
  pages={3},
  year={2009},
  publisher={BioMed Central Ltd}
}

@article{guttmacher2002genomic,
  title={Genomic medicine—a primer},
  author={Guttmacher, Alan E and Collins, Francis S and Guttmacher, Alan E and Collins, Francis S},
  journal={New England Journal of Medicine},
  volume={347},
  number={19},
  pages={1512--1520},
  year={2002},
  publisher={Mass Medical Soc}
}

@article{green2011charting,
  title={Charting a course for genomic medicine from base pairs to bedside},
  author={Green, Eric D and Guyer, Mark S and Institute, National Human Genome Research and others},
  journal={Nature},
  volume={470},
  number={7333},
  pages={204--213},
  year={2011},
  publisher={Nature Publishing Group}
}

@article{ginsburg2001personalized,
  title={Personalized medicine: revolutionizing drug discovery and patient care},
  author={Ginsburg, Geoffrey S and McCarthy, Jeanette J},
  journal={TRENDS in Biotechnology},
  volume={19},
  number={12},
  pages={491--496},
  year={2001},
  publisher={Elsevier}
}

@article{kho2013practical,
  title={Practical challenges in integrating genomic data into the electronic health record},
  author={Kho, Abel N and Rasmussen, Luke V and Connolly, John J and Peissig, Peggy L and Starren, Justin and Hakonarson, Hakon and Hayes, M Geoffrey},
  journal={Genetics in Medicine},
  volume={15},
  number={10},
  pages={772--778},
  year={2013},
  publisher={Nature Publishing Group}
}

@article{martin2002lntegratingfienomics,
  title={lntegratingfienomics into Health Information Systems},
  author={Martin-Sanchez, F and Mooio, V and Lopez-CamposI, G},
  journal={Methods Inf Med},
  volume={4},
  pages={25--30},
  year={2002}
}

@article{decode,
  title={deCODE: A Genealogical Approach to Human Genetics in Iceland},
  author={Jeffrey R Gulcher, Kari Stefansson},
  year={2006},
  publisher={Wiley}
}

@article{roden2008development,
  title={Development of a large-scale de-identified DNA biobank to enable personalized medicine},
  author={Roden, Dan M and Pulley, Jill M and Basford, Melissa A and Bernard, Gordon R and Clayton, Ellen W and Balser, Jeffrey R and Masys, Dan R},
  journal={Clinical Pharmacology \& Therapeutics},
  volume={84},
  number={3},
  pages={362--369},
  year={2008},
  publisher={Nature Publishing Group}
}

@article{kullo2010genome,
  title={A genome-wide association study of red blood cell traits using the electronic medical record},
  author={Kullo, Iftikhar J and Ding, Keyue and Jouni, Hayan and Smith, Carin Y and Chute, Christopher G},
  journal={PLoS One},
  volume={5},
  number={9},
  pages={e13011},
  year={2010},
  publisher={Public Library of Science}
}

@article{siva20081000,
  title={1000 Genomes project},
  author={Siva, Nayanah},
  journal={Nature biotechnology},
  volume={26},
  number={3},
  pages={256--256},
  year={2008},
  publisher={Nature Publishing Group}
}

@article{gibbs2003international,
  title={The international HapMap project},
  author={Gibbs, Richard A and Belmont, John W and Hardenbol, Paul and Willis, Thomas D and Yu, Fuli and Yang, Huanming and Ch'ang, Lan-Yang and Huang, Wei and Liu, Bin and Shen, Yan and others},
  journal={Nature},
  volume={426},
  number={6968},
  pages={789--796},
  year={2003},
  publisher={Nature Publishing Group}
}

@article{mailman2007ncbi,
  title={The NCBI dbGaP database of genotypes and phenotypes},
  author={Mailman, Matthew D and Feolo, Michael and Jin, Yumi and Kimura, Masato and Tryka, Kimberly and Bagoutdinov, Rinat and Hao, Luning and Kiang, Anne and Paschall, Justin and Phan, Lon and others},
  journal={Nature genetics},
  volume={39},
  number={10},
  pages={1181--1186},
  year={2007},
  publisher={Nature Publishing Group}
}

@article{meigs2007genome,
  title={Genome-wide association with diabetes-related traits in the Framingham Heart Study},
  author={Meigs, James B and Manning, Alisa K and Fox, Caroline S and Florez, Jose C and Liu, Chunyu and Cupples, L Adrienne and Dupuis, Jos{\'e}e},
  journal={BMC medical genetics},
  volume={8},
  number={Suppl 1},
  pages={S16},
  year={2007},
  publisher={BioMed Central Ltd}
}

@article{wong2012prediction,
  title={Prediction of susceptibility to major depression by a model of interactions of multiple functional genetic variants and environmental factors},
  author={Wong, ML and Dong, C and Andreev, V and Arcos-Burgos, M and Licinio, J},
  journal={Molecular psychiatry},
  volume={17},
  number={6},
  pages={624--633},
  year={2012},
  publisher={Nature Publishing Group}
}

@article{yucebacs2014prostate,
  title={A prostate cancer model build by a novel SVM-ID3 hybrid feature selection method using both genotyping and phenotype data from dbGaP},
  author={Y{\"u}ceba{\c{s}}, Sait Can and Son, Ye{\c{s}}im Ayd{\i}n},
  journal={PloS one},
  volume={9},
  number={3},
  pages={e91404},
  year={2014},
  publisher={Public Library of Science}
}

@article{cheadle1993direct,
  title={Direct sequencing of the complete CFTR gene: the molecular characterisation of 99.5\% of CF chromosomes in Wales},
  author={Cheadle, Jeremy P and Goodchild, Mary C and Meredith, Alison L},
  journal={Human molecular genetics},
  volume={2},
  number={10},
  pages={1551--1556},
  year={1993},
  publisher={Oxford Univ Press}
}

@article{lancaster1998brca1,
  title={BRCA1 and BRCA2 in breast cancer families from Wales: moderate mutation frequency and two recurrent mutations in BRCA1.},
  author={Lancaster, JM and Carney, ME and Gray, J and Myring, J and Gumbs, C and Sampson, J and Wheeler, D and France, E and Wiseman, R and Harper, P and others},
  journal={British journal of cancer},
  volume={78},
  number={11},
  pages={1417},
  year={1998},
  publisher={Nature Publishing Group}
}

@article{haralambos20121,
  title={(1) Genetic testing for familial hypercholesterolaemia in wales: identification of recurrent and novel variants},
  author={Haralambos, K and Whatley, S and Datta, D and McDowell, I},
  journal={Atherosclerosis},
  volume={223},
  number={2},
  pages={528},
  year={2012},
  publisher={Elsevier}
}

@article{liu2011dbnsfp,
  title={dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions},
  author={Liu, Xiaoming and Jian, Xueqiu and Boerwinkle, Eric},
  journal={Human mutation},
  volume={32},
  number={8},
  pages={894--899},
  year={2011},
  publisher={Wiley Online Library}
}

@article{schwarz2010mutationtaster,
  title={MutationTaster evaluates disease-causing potential of sequence alterations},
  author={Schwarz, Jana Marie and R{\"o}delsperger, Christian and Schuelke, Markus and Seelow, Dominik},
  journal={Nature methods},
  volume={7},
  number={8},
  pages={575--576},
  year={2010},
  publisher={Nature Publishing Group}
}

@article{wang2010annovar,
  title={ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data},
  author={Wang, Kai and Li, Mingyao and Hakonarson, Hakon},
  journal={Nucleic acids research},
  volume={38},
  number={16},
  pages={e164--e164},
  year={2010},
  publisher={Oxford Univ Press}
}

@article{altschul1997gapped,
  title={Gapped BLAST and PSI-BLAST: a new generation of protein database search programs},
  author={Altschul, Stephen F and Madden, Thomas L and Sch{\"a}ffer, Alejandro A and Zhang, Jinghui and Zhang, Zheng and Miller, Webb and Lipman, David J},
  journal={Nucleic acids research},
  volume={25},
  number={17},
  pages={3389--3402},
  year={1997},
  publisher={Oxford Univ Press}
}

@article{joosten2011series,
  title={A series of PDB related databases for everyday needs},
  author={Joosten, Robbie P and Te Beek, Tim AH and Krieger, Elmar and Hekkelman, Maarten L and Hooft, Rob WW and Schneider, Reinhard and Sander, Chris and Vriend, Gert},
  journal={Nucleic acids research},
  volume={39},
  number={suppl 1},
  pages={D411--D419},
  year={2011},
  publisher={Oxford Univ Press}
}

@article{berman2000protein,
  title={The protein data bank},
  author={Berman, Helen M and Westbrook, John and Feng, Zukang and Gilliland, Gary and Bhat, TN and Weissig, Helge and Shindyalov, Ilya N and Bourne, Philip E},
  journal={Nucleic acids research},
  volume={28},
  number={1},
  pages={235--242},
  year={2000},
  publisher={Oxford Univ Press}
}

@article{chapman2000biopython,
  title={Biopython: Python tools for computational biology},
  author={Chapman, Brad and Chang, Jeffrey},
  journal={ACM SIGBIO Newsletter},
  volume={20},
  number={2},
  pages={15--19},
  year={2000},
  publisher={ACM}
}

@article{pickrell2014epilepsy,
  title={EPILEPSY PREVALENCE, INCIDENCE AND SOCIOECONOMIC DEPRIVATION},
  author={Pickrell, Owen and Lacey, Arron and Bodger, Owen and Demmler, Joanne and Thomas, Rhys and Lyons, Ronan and Smith, Phil and Rees, Mark and Kerr, Mike},
  journal={Journal of Neurology, Neurosurgery \& Psychiatry},
  volume={85},
  number={10},
  pages={e4--e4},
  year={2014},
  publisher={BMJ Publishing Group Ltd}
}

@article{pickrell2014trends,
  title={Trends in the first antiepileptic drug prescribed for epilepsy between 2000 and 2010},
  author={Pickrell, W Owen and Lacey, Arron S and Thomas, Rhys H and Lyons, Ronan A and Smith, Phil EM and Rees, Mark I},
  journal={Seizure},
  volume={23},
  number={1},
  pages={77--80},
  year={2014},
  publisher={Elsevier}
}

@article{pickrell2012weight,
  title={Weight change associated with antiepileptic drugs},
  author={Pickrell, William Owen and Lacey, Arron S and Thomas, Rhys H and Smith, Philip EM and Rees, Mark I},
  journal={Journal of Neurology, Neurosurgery \& Psychiatry},
  pages={jnnp--2012},
  year={2012},
  publisher={BMJ Publishing Group Ltd}
}

Kann irgendjemand einen Fehler erkennen? Wie ich bereits sagte, funktionieren einige Referenzen (z. B. altschul1997gapped).

Antwort1

Ich kann den von Ihnen gemeldeten Fehler nicht reproduzieren. Mir sind jedoch einige Probleme in Ihrer Bibliographiedatei aufgefallen, die behoben werden sollten.

  • Das Wichtigste auf den titleFeldern ist, dass Sie darauf achten müssennichtum BibTeX zu ermöglichen, Wörter klein zu schreiben, die nicht klein geschrieben werden sollen. Dazu gehören Wörter wie Wales(das Land) und Akronyme ( DNA, HGVbase).

  • Einige Autoren sind „Corporate Authors“, z. B.

    author={1000 Genomes Project Consortium and others},

    Wenn Sie nicht aufpassen, wird der erste Autor von BibTeX so interpretiert, als hätte er die Vornamen „1000“, „Genomes“ und „Project“ und den Nachnamen „Consortium“ (und wird daher unter C für Consortium sortiert!). Huch!! Sie müssen dieses Autorenfeld wie folgt schreiben

    author={{1000 Genomes Project Consortium} and others}

    d. h., schließen Sie den gesamten Namen des ersten Autors in ein zusätzliches Paar geschweifter Klammern ein. Ebenso müssen Sie schreiben

    author={Green, Eric D and Guyer, Mark S and {National Human Genome Research Institute} and others},

  • Achten Sie darauf, nur das Schlüsselwort zu verwenden andund keine Kommas zur Trennung der Autoren zu verwenden. Im Eintrag mit dem Schlüssel decodehaben Sie derzeit

    author={Jeffrey R Gulcher, Kari Stefansson},

    Nach den Syntaxregeln von BibTeX wird dieser Eintrag so interpretiert, als hätte er eineeinzelAutor mit einem aus drei Wörtern bestehenden Nachnamen („Jeffrey R Gulcher“) und zwei Vornamen – „Kari“ und „Stefansson“; es wird daher auch unter „J“ für „Jeffrey“ und nicht unter „G“ für „Gulcher“ sortiert. Ich glaube, dieses Feld sollte

    author={Jeffrey R Gulcher and Kari Stefansson},

  • Sie geben Akzentzeichen sehr gut ein, aber in der Bib-Galle sind noch andere Nicht-7-Bit-ASCII-Zeichen vorhanden. Sie müssen beispielsweise —durch ersetzen ---, um einen Geviertstrich zu erhalten.

  • Es macht doch keinen Sinn, doppelte Einträge zu haben, oder? Löschen Sie daher die zweite Instanz des Eintrags mit dem Schlüssel bromberg2007snap".

  • Optional (und im Code unten nicht implementiert): Ich würde auch Punkte am Ende abgekürzter Vornamen hinzufügen, d. h. Collins, Francis S. and Brooks, Lisa D.statt schreiben Collins, Francis S and Brooks, Lisa D. Wenn der von Ihnen verwendete Bibliographiestil zufällig die Punkte löscht, ist das in Ordnung. Allerdings wird keine mir bekannte Bib-Stildateihinzufügendie Punkte automatisch, wenn sie fehlen.

  • Irgendwo zwischen optional und erforderlich, aber sicherlich durchaus wünschenswert (und im folgenden Code auch nicht implementiert): Sie sollten versuchen, die Informationen über die Namen der Autoren über alle Einträge hinweg konsistent zu halten. Sie haben beispielsweise die folgenden zwei Einträge:

    @article{pickrell2014epilepsy,
  ...,
  author={Pickrell, Owen and Lacey, Arron and Bodger, Owen and Demmler, Joanne and Thomas, Rhys and Lyons, Ronan and Smith, Phil and Rees, Mark and Kerr, Mike},
  ...,
}

@article{pickrell2014trends,
  ...,
  author={Pickrell, W Owen and Lacey, Arron S and Thomas, Rhys H and Lyons, Ronan A and Smith, Phil EM and Rees, Mark I},
  ...,
}

    Der zweite Eintrag enthält die zweiten Initialen aller Autoren, der erste hingegen nicht. Um Verwirrungen darüber zu vermeiden, ob es sich bei diesen Autoren um dieselben handelt, sollten Sie die fehlenden Informationen im ersten Eintrag angeben.

\documentclass{article}
\usepackage{filecontents}
\begin{filecontents}{\jobname.bib}

@article{cargill1999characterization,
  title={Characterization of single-nucleotide polymorphisms in coding regions of human genes},
  author={Cargill, Michele and Altshuler, David and Ireland, James and Sklar, Pamela and Ardlie, Kristin and Patil, Nila and Lane, Charles R and Lim, Esther P and Kalyanaraman, Nilesh and Nemesh, James and others},
  journal={Nature genetics},
  volume={22},
  number={3},
  pages={231--238},
  year={1999},
  publisher={Nature Publishing Group}
}

@article{collins1998dna,
  title={A {DNA} polymorphism discovery resource for research on human genetic variation},
  author={Collins, Francis S and Brooks, Lisa D and Chakravarti, Aravinda},
  journal={Genome research},
  volume={8},
  number={12},
  pages={1229--1231},
  year={1998},
  publisher={Cold Spring Harbor Lab}
}

@article{frazer2009human,
  title={Human genetic variation and its contribution to complex traits},
  author={Frazer, Kelly A and Murray, Sarah S and Schork, Nicholas J and Topol, Eric J},
  journal={Nature Reviews Genetics},
  volume={10},
  number={4},
  pages={241--251},
  year={2009},
  publisher={Nature Publishing Group}
}

@article{10002010map,
  title={A map of human genome variation from population-scale sequencing},
  author={{1000 Genomes Project Consortium} and others},
  journal={Nature},
  volume={467},
  number={7319},
  pages={1061--1073},
  year={2010},
  publisher={Nature Publishing Group}
}

@article{smigielski2000dbsnp,
  title={{dbSNP}: a database of single nucleotide polymorphisms},
  author={Smigielski, Elizabeth M and Sirotkin, Karl and Ward, Minghong and Sherry, Stephen T},
  journal={Nucleic Acids Research},
  volume={28},
  number={1},
  pages={352--355},
  year={2000},
  publisher={Oxford Univ Press}
}

@article{fredman2002hgvbase,
  title={{HGVbase}: a human sequence variation database emphasizing data quality and a broad spectrum of data sources},
  author={Fredman, D and Siegfried, Marianne and Yuan, Yan P. and Bork, Peer and Lehv{\"a}slaiho, Heikki and Brookes, Anthony J},
  journal={Nucleic acids research},
  volume={30},
  number={1},
  pages={387--391},
  year={2002},
  publisher={Oxford Univ Press}
}

@article{hamosh2005online,
  title={{Online Mendelian Inheritance in Man (OMIM)}, a knowledgebase of human genes and genetic disorders},
  author={Hamosh, Ada and Scott, Alan F and Amberger, Joanna S and Bocchini, Carol A and McKusick, Victor A},
  journal={Nucleic acids research},
  volume={33},
  number={suppl 1},
  pages={D514--D517},
  year={2005},
  publisher={Oxford Univ Press}
}

@article{becker2004genetic,
  title={The genetic association database},
  author={Becker, Kevin G and Barnes, Kathleen C and Bright, Tiffani J and Wang, S Alex},
  journal={Nature genetics},
  volume={36},
  number={5},
  pages={431--432},
  year={2004},
  publisher={Nature Publishing Group}
}

@article{cooper1998human,
  title={The human gene mutation database},
  author={Cooper, David N and Ball, Edward V and Krawczak, Michael},
  journal={Nucleic acids research},
  volume={26},
  number={1},
  pages={285--287},
  year={1998},
  publisher={Oxford Univ Press}
}

@article{karolchik2003ucsc,
  title={The {UCSC} genome browser database},
  author={Karolchik, Donna and Baertsch, Robert and Diekhans, Mark and Furey, Terrence S. and Hinrichs, A and Lu, YT and Roskin, Krishna M. and Schwartz, M and Sugnet, Charles W. and Thomas, Daryl J and others},
  journal={Nucleic acids research},
  volume={31},
  number={1},
  pages={51--54},
  year={2003},
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Antwort2

(Das ist zwar ein Kommentar, aber so lässt er sich leichter formatieren)

Es gibt eine Wiederholung

Wiederholter Eintrag --- Zeile 208 der Datei x.bib:@article{bromberg2007snap

Ich habe Ihr Beispiel für fehlende Referenzen mit diesem MWE ausprobiert.

\documentclass{article}
\begin{document}    
\cite{altschul1997gapped}
\bibliographystyle{plain}
\bibliography{x}              %% to get x.bib
\end{document}

und es funktioniert einwandfrei. Bitte prüfen Sie, ob es bei Ihnen funktioniert.

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