Recibo este error mientras intento geopandasinstalar Ubuntu 20.04conPython3.7
Esto es lo que estoy haciendo:
git clone https://github.com/geopandas/geopandas.git
cd geopandas
pip install .
Debajo del proceso
Processing /home/d1-user/geopandas
Requirement already satisfied: pandas>=0.24.0 in /usr/local/lib/python3.7/site-packages (from geopandas==0.9.0+25.gdd2ed8e) (1.1.5)
Requirement already satisfied: shapely>=1.6 in /usr/local/lib/python3.7/site-packages (from geopandas==0.9.0+25.gdd2ed8e) (1.7.1)
Requirement already satisfied: fiona>=1.8 in /usr/local/lib/python3.7/site-packages (from geopandas==0.9.0+25.gdd2ed8e) (1.8.19)
Collecting pyproj>=2.2.0 (from geopandas==0.9.0+25.gdd2ed8e)
Using cached https://files.pythonhosted.org/packages/7c/1d/20ea3b603db61ccc60f45064a9e00ba2e6263f1de560e33306f6f3d42fcb/pyproj-3.1.0.tar.gz
Installing build dependencies ... done
Requirement already satisfied: pytz>=2017.2 in /usr/local/lib/python3.7/site-packages (from pandas>=0.24.0->geopandas==0.9.0+25.gdd2ed8e) (2021.1)
Requirement already satisfied: numpy>=1.15.4 in /usr/local/lib/python3.7/site-packages (from pandas>=0.24.0->geopandas==0.9.0+25.gdd2ed8e) (1.20.3)
Requirement already satisfied: python-dateutil>=2.7.3 in /usr/local/lib/python3.7/site-packages (from pandas>=0.24.0->geopandas==0.9.0+25.gdd2ed8e) (2.8.1)
Requirement already satisfied: certifi in /usr/local/lib/python3.7/site-packages (from fiona>=1.8->geopandas==0.9.0+25.gdd2ed8e) (2020.12.5)
Requirement already satisfied: six>=1.7 in /usr/local/lib/python3.7/site-packages (from fiona>=1.8->geopandas==0.9.0+25.gdd2ed8e) (1.16.0)
Requirement already satisfied: click-plugins>=1.0 in /usr/local/lib/python3.7/site-packages (from fiona>=1.8->geopandas==0.9.0+25.gdd2ed8e) (1.1.1)
Requirement already satisfied: cligj>=0.5 in /usr/local/lib/python3.7/site-packages (from fiona>=1.8->geopandas==0.9.0+25.gdd2ed8e) (0.7.1)
Requirement already satisfied: click<8,>=4.0 in /usr/local/lib/python3.7/site-packages (from fiona>=1.8->geopandas==0.9.0+25.gdd2ed8e) (7.1.2)
Requirement already satisfied: munch in /usr/local/lib/python3.7/site-packages (from fiona>=1.8->geopandas==0.9.0+25.gdd2ed8e) (2.5.0)
Requirement already satisfied: attrs>=17 in /usr/local/lib/python3.7/site-packages (from fiona>=1.8->geopandas==0.9.0+25.gdd2ed8e) (21.2.0)
Installing collected packages: pyproj, geopandas
Running setup.py install for pyproj ... error
Complete output from command /usr/local/bin/python3.7 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-4tpthiyu/pyproj/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-56avnl0l/install-record.txt --single-version-externally-managed --compile:
/tmp/pip-build-env-xjhuovi8/lib/python3.7/site-packages/setuptools/dist.py:694: UserWarning: Usage of dash-separated 'license-file' will not be supported in future versions. Please use the underscore name 'license_file' instead
% (opt, underscore_opt))
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/pyproj
copying pyproj/_show_versions.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/utils.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/proj.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/compat.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/enums.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/network.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/datadir.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/exceptions.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/sync.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/aoi.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/geod.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/__init__.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/transformer.py -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/__main__.py -> build/lib.linux-x86_64-3.7/pyproj
creating build/lib.linux-x86_64-3.7/pyproj/crs
copying pyproj/crs/_cf1x8.py -> build/lib.linux-x86_64-3.7/pyproj/crs
copying pyproj/crs/enums.py -> build/lib.linux-x86_64-3.7/pyproj/crs
copying pyproj/crs/datum.py -> build/lib.linux-x86_64-3.7/pyproj/crs
copying pyproj/crs/__init__.py -> build/lib.linux-x86_64-3.7/pyproj/crs
copying pyproj/crs/coordinate_system.py -> build/lib.linux-x86_64-3.7/pyproj/crs
copying pyproj/crs/coordinate_operation.py -> build/lib.linux-x86_64-3.7/pyproj/crs
copying pyproj/crs/crs.py -> build/lib.linux-x86_64-3.7/pyproj/crs
copying pyproj/_sync.pyi -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/_transformer.pyi -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/_geod.pyi -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/list.pyi -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/database.pyi -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/_crs.pyi -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/_datadir.pyi -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/_network.pyi -> build/lib.linux-x86_64-3.7/pyproj
copying pyproj/py.typed -> build/lib.linux-x86_64-3.7/pyproj
running build_ext
building 'pyproj._geod' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/pyproj
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/usr/include -I/usr/local/include/python3.7m -c pyproj/_geod.c -o build/temp.linux-x86_64-3.7/pyproj/_geod.o
pyproj/_geod.c:639:10: fatal error: geodesic.h: No such file or directory
639 | #include "geodesic.h"
| ^~~~~~~~~~~~
compilation terminated.
error: command 'gcc' failed with exit status 1
----------------------------------------
Command "/usr/local/bin/python3.7 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-4tpthiyu/pyproj/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-56avnl0l/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-install-4tpthiyu/pyproj/
Respuesta1
De acuerdo con laDocumentación de geopandas(énfasis mío):
Dependiendo de su plataforma, es posible que necesite compilar e instalar sus dependencias de C manualmente.Nos referimos a los paquetes individuales para obtener más detalles sobre cómo instalarlos. El uso de conda (ver arriba) evita la necesidad de compilar las dependencias usted mismo.
Así que asegúrese de tenerlo python-devinstalado build-essentialantes de ejecutar pip install .:
sudo apt install python3-dev build-essential
python3-devcontiene archivos de encabezado y una biblioteca estática para Python y ya debería estar instalado de forma predeterminada. Se menciona enesta pregunta SO similary parece resolver el problema del OP.build-essentiales un metapaquete que instala las herramientas más comunes ( ,,,gccetc. ) necesarias para compilar paquetes.g++make