Estoy usando esta plantilla de bioinformática. Estoy intentando compilarlo pero parece que no puedo resolver estos dos errores.
En cuanto al error de secuencia de control indefinida, parece que se debe a un comando incorrecto. \maketitle es válido pero sigue dando un error.
Acerca del párrafo que terminó antes de \abstract fue un error completo, leí que podría deberse a llaves desequilibradas. Ese tampoco es el caso.
Aquí está el código que estoy usando.
\documentclass{bioinfo}
\copyrightyear{2005}
\pubyear{2005}
\usepackage{grffile}
\usepackage{epstopdf}
\usepackage{graphicx}
\begin{document}
\firstpage{1}
\title[short Title]{This is a title}
\author[Sample \textit{et~al}]{Corresponding Author\,$^{1,*}$, Co-Author\,$^{2}$ and Co-Author\,$^2$\footnote{to whom correspondence should be addressed}}
\address{$^{1}$Department of XXXXXXX, Address XXXX etc.\\
$^{2}$Department of XXXXXXXX, Address XXXX etc.}
\history{Received on XXXXX; revised on XXXXX; accepted on XXXXX}
\editor{Associate Editor: XXXXXXX}
\maketitle
\begin{abstract}
\section{Motivation:}
Text Text Text Text Text Text Text Text Text Text Text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text.
\section{Results:}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text
\section{Availability:}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text
\section{Contact:} \href{[email protected]}{[email protected]}
\end{abstract}
\section{Introduction}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure~\ref{fig:01} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citep{Bag01} wants to know about text follows.
\begin{equation}
\sum x+ y =Z\label{eq:01}
\end{equation}
\section{Approach}
Equation~(\ref{eq:01}) Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
\begin{methods}
\section{Methods}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
\begin{itemize}
\item for bulleted list, use itemize
\item for bulleted list, use itemize
\item for bulleted list, use itemize
\end{itemize}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text.
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
\begin{table}[!t]
\processtable{This is table caption\label{Tab:01}}
{\begin{tabular}{llll}\toprule
head1 & head2 & head3 & head4\\\midrule
row1 & row1 & row1 & row1\\
row2 & row2 & row2 & row2\\
row3 & row3 & row3 & row3\\
row4 & row4 & row4 & row4\\\botrule
\end{tabular}}{This is a footnote}
\end{table}
\end{methods}
\begin{figure}[!tpb]%figure1
%\centerline{\includegraphics{fig01.eps}}
\caption{Caption, caption.}\label{fig:01}
\end{figure}
\begin{figure}[!tpb]%figure2
%\centerline{\includegraphics{fig02.eps}}
\caption{Caption, caption.}\label{fig:02}
\end{figure}
\section{Discussion}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text.
Table~\ref{Tab:01} shows that Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that
the above method Text Text. Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that
the above method Text Text. Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that
the above method Text Text.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% please remove the " % " symbol from \centerline{\includegraphics{fig01.eps}}
% as it may ignore the figures.
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\section{Conclusion}
(Table~\ref{Tab:01}) Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text.
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
\begin{enumerate}
\item this is item, use enumerate
\item this is item, use enumerate
\item this is item, use enumerate
\end{enumerate}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text.
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text
\section*{Acknowledgement}
Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
\paragraph{Funding\textcolon} Text Text Text Text Text Text Text Text.
%\bibliographystyle{natbib}
%\bibliographystyle{achemnat}
%\bibliographystyle{plainnat}
%\bibliographystyle{abbrv}
%\bibliographystyle{bioinformatics}
%
%\bibliographystyle{plain}
%
%\bibliography{Document}
\begin{thebibliography}{}
\bibitem[Bofelli {\it et~al}., 2000]{Boffelli03} Bofelli,F., Name2, Name3 (2003) Article title, {\it Journal Name}, {\bf 199}, 133-154.
\bibitem[Bag {\it et~al}., 2001]{Bag01} Bag,M., Name2, Name3 (2001) Article title, {\it Journal Name}, {\bf 99}, 33-54.
\bibitem[Yoo \textit{et~al}., 2003]{Yoo03}
Yoo,M.S. \textit{et~al}. (2003) Oxidative stress regulated genes
in nigral dopaminergic neurnol cell: correlation with the known
pathology in Parkinson's disease. \textit{Brain Res. Mol. Brain
Res.}, \textbf{110}(Suppl. 1), 76--84.
\bibitem[Lehmann, 1986]{Leh86}
Lehmann,E.L. (1986) Chapter title. \textit{Book Title}. Vol.~1, 2nd edn. Springer-Verlag, New York.
\bibitem[Crenshaw and Jones, 2003]{Cre03}
Crenshaw, B.,III, and Jones, W.B.,Jr (2003) The future of clinical
cancer management: one tumor, one chip. \textit{Bioinformatics},
doi:10.1093/bioinformatics/btn000.
\bibitem[Auhtor \textit{et~al}. (2000)]{Aut00}
Auhtor,A.B. \textit{et~al}. (2000) Chapter title. In Smith, A.C.
(ed.), \textit{Book Title}, 2nd edn. Publisher, Location, Vol. 1, pp.
???--???.
\bibitem[Bardet, 1920]{Bar20}
Bardet, G. (1920) Sur un syndrome d'obesite infantile avec
polydactylie et retinite pigmentaire (contribution a l'etude des
formes cliniques de l'obesite hypophysaire). PhD Thesis, name of
institution, Paris, France.
\end{thebibliography}
\end{document
Aquí hay un enlace al archivo bioinfo.cls. https://www.dropbox.com/s/a65ubzzauuquxvf/bioinfo.cls?dl=0
Respuesta1
En el bioinfo.cls hay un entorno comentado también llamado abstract.
%\newenvironment{abstract}{%
% \begingroup
% \let\section\absection
% \fontfamily{\sfdefault}\fontsize{10}{12}\sffamily\selectfont
% {\fontseries{b}\selectfont Abstract}\par}
%{\endgroup\bigskip\@afterheading\@afterindentfalse\vskip 12pt plus 3pt minus 1pt}
Puede ser una versión antigua de la clase y la plantilla proporcionada no se ha actualizado. Esa es la razón por la que debes definir
\abstract{my abstract here}y \corresp{corresponding author}antes del comienzo del documento (como lo menciona @Johannes_B)
Por lo tanto tienes que tener esta estructura:
\history{Received on XXXXX; revised on XXXXX; accepted on XXXXX}
\editor{Associate Editor: XXXXXXX
\corresp{TEST}
\abstract{Short version of your abstract.}
\begin{document}
\firstpage{1}
\begin{abstract}
The long version of your abstract.
\end{abstract}
\maketitle
\section{Introduction}