Imprimir bibliografia após o apêndice

Imprimir bibliografia após o apêndice

Estou escrevendo minha tese em Latex e tenho um problema ao somar todas as seções, não consigo colocá-las na ordem que desejo e aparecer no índice. Existe um truque para isso? Eu sou bastante novo nisso, então quaisquer dicas ou correções seriam ótimas.

Eu gostaria de ter um índice como este:

Abstrato

listas de tabelas etc (não numeradas)


Capítulos (numerados)


Apêndice (não numerado)


Bibliografia (não numerada)

Posso imprimir todas as seções nesta ordem, ou seja, o pdf é compilado na ordem correta, mas a bibliografia não aparece no índice. Se eu mudar o código para que a bibliografia seja impressa antes do apêndice, tudo aparecerá no índice.

Aqui está um MWE. Basta mudar a bibliografia para antes e depois do apêndice para ver os resultados.

\documentclass[12pt,a4paper,hidelinks,twoside]{report}
\raggedbottom
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage[greek,spanish,english]{babel}
\usepackage{textgreek}
\usepackage[version=3]{mhchem}
\usepackage[a4paper,width=150mm,top=25mm,bottom=25mm,bindingoffset=6mm]{geometry}
\usepackage{amsmath, amsfonts, amssymb, pifont, float, color, url}
\usepackage[pdftex]{graphicx}
\usepackage[style=nature,backend=biber,sorting=none]{biblatex}
\addbibresource{references.bib}
\usepackage[pdftex, plainpages=false, pdfpagelabels, bookmarks=true]{hyperref}
\usepackage{fancyhdr}
\usepackage[center,font={it,small},skip=5pt]{caption}
\usepackage{parskip}
\usepackage{tikz}
\usepackage{afterpage}
\usepackage{siunitx}
\usepackage{tabularx}
\usepackage{lscape}
\usepackage{textcomp}
\usepackage{listings}
\lstset{basicstyle=\scriptsize\ttfamily,
  frame=tb,
  aboveskip=3mm,
  belowskip=3mm,
  showstringspaces=false,
  commentstyle=\color{red},
  keywordstyle=\color{blue}
}
\usepackage{datetime}
\usepackage{longtable}
\usepackage{lipsum}
\usepackage{dcolumn}
\newcolumntype{d}{D{.}{.}{2}}
\usepackage{makeidx}
\makeindex
\usepackage{nomencl}
\makenomenclature 
\usepackage{tocloft}
\usepackage{soul}
\pretolerance=10000 %% prevents words from being hyphenated when the line splits.
\usepackage{todonotes}
\pdfpageattr {/Group << /S /Transparency /I true /CS /DeviceRGB>>} %correct viewing in adobe reader
\DeclareUnicodeCharacter{FB01}{fi}
\DeclareUnicodeCharacter{00A0}{~}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%% Use packages above and set them up %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\pagestyle{fancy} %\pagestyle{plain} to have just page numbers restate fancy afterwards or all pages from that point will be plain.
\fancyhf{}
\cfoot{\thepage}
\graphicspath{ {Pictures/} }
\renewcommand{\headrulewidth}{0.4pt}
\newcommand{\etal}{\textit{et al. }}
\renewcommand{\nomname}{List of Abbreviations}

%% an equation caption solution from the web by Heiko Oberdiek
\newcommand{\capequ}[1]{\begin{center} #1 \end{center}}
\usepackage{aliascnt}
\newaliascnt{eqfloat}{equation}
\newfloat{eqfloat}{h}{eqflts}
\floatname{eqfloat}{Equation}

\newcommand*{\ORGeqfloat}{}
\let\ORGeqfloat\eqfloat
\def\eqfloat{%
  \let\ORIGINALcaption\caption
  \def\caption{%
    \addtocounter{equation}{-1}%
    \ORIGINALcaption
  }%
  \ORGeqfloat
}

\newenvironment{tightcenter}{%
  \setlength\topsep{0pt}
  \setlength\parskip{0pt}
  \begin{center}
}{%
  \end{center}
}

\newcommand{\listequationsname}{List of Equations}
\newlistof{myequations}{equ}{\listequationsname}
\newcommand{\myequations}[1]{%
\addcontentsline{equ}{myequations}{\protect\numberline{\theequation}#1}\par}
\setlength{\cftmyequationsnumwidth}{2.5em}% Width of equation number in List of Equations

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%% Document variables above and user defined commands %%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% BEGIN THE DOCUMENT %
\sloppy
\color{black}
\begin{document}
\begin{titlepage}
    \begin{center}
        \vspace*{0.25cm}

        \Huge
        \textbf{Thesis}

        \vspace{0.5cm}
        %\LARGE
        %Thesis Subtitle

        \vspace{1.0cm}
        A logo
        \vspace{1.0cm}

        \textbf{}

        \normalsize This thesis is submitted in partial fulfilment for the degree of\\ Doctor of Philosophy\\ 
        \vspace{0.3cm}
        \today
        %%\vspace{0.5cm}

        \Large
        School of Chemistry\\
        University of St Andrews\\


    \end{center}
\end{titlepage}
\pagestyle{headings}
\setcounter{page}{1}
\pagenumbering{roman}

\addcontentsline{toc}{chapter}{\protect\numberline{}Contents}\tableofcontents

\newpage

\chapter*{\centerline{Abstract}}\label{Abstract}
\addcontentsline{toc}{chapter}{\protect\numberline{}Abstract}
In this thesis
\newpage

\chapter*{\centerline{Dedication}}\label{dedication}
\addcontentsline{toc}{chapter}{\protect\numberline{}Dedication} 
\begin{center}
\large
\vspace*{\fill}
For my Family and Friends
\vspace*{\fill}
\end{center}
\newpage

\chapter*{\centerline{Declaration}}\label{Declaration}
\addcontentsline{toc}{chapter}{\protect\numberline{}Declaration} 
........... Declares that ......  
\newpage

\chapter*{\centerline{Acknowledgements}}\label{Acknowledgements}
\addcontentsline{toc}{chapter}{\protect\numberline{}Acknowledgements}
I would like to thank ......
\newpage

\chapter*{\centerline{Publications}}\label{Publications}
\addcontentsline{toc}{chapter}{\protect\numberline{}Publications}
Publication 1 ......
\newpage

\clearpage
\phantomsection\addcontentsline{toc}{chapter}{\protect\numberline{}List of Figures}
\listoffigures
\newpage

\clearpage
\phantomsection\addcontentsline{toc}{chapter}{\protect\numberline{}List of Tables}
\listoftables
\newpage

\clearpage
\phantomsection\addcontentsline{toc}{chapter}{\protect\numberline{}List of Equations}
\listofmyequations
\newpage

\printnomenclature[5cm]
\addcontentsline{toc}{chapter}{\protect\numberline{}List of Abbreviations}
\newpage

\thispagestyle{plain}
\begin{center}
\large
\vspace*{\fill}
\textit{Quote}
\vspace*{\fill}
\end{center}

\newpage

\setcounter{page}{1}
\pagenumbering{arabic}

\chapter{Introduction}
\label{chap:introduction}
\input{Chapters/Introduction}

\chapter{Theory and Methods}
\label{chap:Theory and Methods}
\input{Chapters/Chapter_2}

%\cleardoublepage
%\phantomsection
%\addcontentsline{toc}{chapter}{\protect\numberline{}Bibliography}
%\printbibliography

\appendix
\clearpage
\phantomsection\addcontentsline{toc}{chapter}{\protect\numberline{}Appendices}  
\addtocontents{toc}{\protect\setcounter{tocdepth}{-1}}
\input{chapters/appendix}

\cleardoublepage
\phantomsection
\addcontentsline{toc}{chapter}{\protect\numberline{}Bibliography}
\printbibliography


%\newpage


\end{document}

Após algumas mudanças rápidas e um comentário útil abaixo, isso pode ser corrigido simplesmente adicionando \addtocontents{toc}{\protect\setcounter{tocdepth}{0}}antes da bibliografia ser impressa.

Responder1

Desculpe por responder minha própria pergunta após uma indicação de Johannes_B. Corrigi o código redefinindo tocprofundidade para 0. Obrigado Johannes_B pelo seu comentário. As mudanças são,

\appendix
\clearpage
\phantomsection\addcontentsline{toc}{chapter}{\protect\numberline{}Appendices}  
\addtocontents{toc}{\protect\setcounter{tocdepth}{-1}}
\input{chapters/appendix}

\addtocontents{toc}{\protect\setcounter{tocdepth}{0}}
\cleardoublepage
\phantomsection
\addcontentsline{toc}{chapter}{\protect\numberline{}Bibliography}
\printbibliography
\end{Document}

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