Estou usando este modelo de bioinformática. Estou tentando compilá-lo, mas não consigo resolver esses dois erros.
Sobre o erro de sequência de controle indefinida, parece que foi causado por um comando errado. \maketitle é válido, mas ainda apresenta erro.
Sobre o parágrafo terminado antes de \abstract ser um erro completo, li que pode ser por causa de colchetes desequilibrados. Esse também não é o caso.
Aqui está o código que estou usando.
\documentclass{bioinfo}
\copyrightyear{2005}
\pubyear{2005}
\usepackage{grffile}
\usepackage{epstopdf}
\usepackage{graphicx}
\begin{document}
\firstpage{1}
\title[short Title]{This is a title}
\author[Sample \textit{et~al}]{Corresponding Author\,$^{1,*}$, Co-Author\,$^{2}$ and Co-Author\,$^2$\footnote{to whom correspondence should be addressed}}
\address{$^{1}$Department of XXXXXXX, Address XXXX etc.\\
$^{2}$Department of XXXXXXXX, Address XXXX etc.}
\history{Received on XXXXX; revised on XXXXX; accepted on XXXXX}
\editor{Associate Editor: XXXXXXX}
\maketitle
\begin{abstract}
\section{Motivation:}
Text Text Text Text Text Text Text Text Text Text Text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text.
\section{Results:}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text
\section{Availability:}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text
\section{Contact:} \href{[email protected]}{[email protected]}
\end{abstract}
\section{Introduction}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure~\ref{fig:01} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citep{Bag01} wants to know about text follows.
\begin{equation}
\sum x+ y =Z\label{eq:01}
\end{equation}
\section{Approach}
Equation~(\ref{eq:01}) Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
\begin{methods}
\section{Methods}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
\begin{itemize}
\item for bulleted list, use itemize
\item for bulleted list, use itemize
\item for bulleted list, use itemize
\end{itemize}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text.
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
\begin{table}[!t]
\processtable{This is table caption\label{Tab:01}}
{\begin{tabular}{llll}\toprule
head1 & head2 & head3 & head4\\\midrule
row1 & row1 & row1 & row1\\
row2 & row2 & row2 & row2\\
row3 & row3 & row3 & row3\\
row4 & row4 & row4 & row4\\\botrule
\end{tabular}}{This is a footnote}
\end{table}
\end{methods}
\begin{figure}[!tpb]%figure1
%\centerline{\includegraphics{fig01.eps}}
\caption{Caption, caption.}\label{fig:01}
\end{figure}
\begin{figure}[!tpb]%figure2
%\centerline{\includegraphics{fig02.eps}}
\caption{Caption, caption.}\label{fig:02}
\end{figure}
\section{Discussion}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text.
Table~\ref{Tab:01} shows that Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that
the above method Text Text. Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that
the above method Text Text. Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that
the above method Text Text.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% please remove the " % " symbol from \centerline{\includegraphics{fig01.eps}}
% as it may ignore the figures.
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\section{Conclusion}
(Table~\ref{Tab:01}) Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text.
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
\begin{enumerate}
\item this is item, use enumerate
\item this is item, use enumerate
\item this is item, use enumerate
\end{enumerate}
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text.
Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text. Figure \ref{fig:02} shows that the above method Text Text Text Text
\section*{Acknowledgement}
Text Text Text Text Text Text Text Text. \citealp{Boffelli03} might want to know about text text text text
\paragraph{Funding\textcolon} Text Text Text Text Text Text Text Text.
%\bibliographystyle{natbib}
%\bibliographystyle{achemnat}
%\bibliographystyle{plainnat}
%\bibliographystyle{abbrv}
%\bibliographystyle{bioinformatics}
%
%\bibliographystyle{plain}
%
%\bibliography{Document}
\begin{thebibliography}{}
\bibitem[Bofelli {\it et~al}., 2000]{Boffelli03} Bofelli,F., Name2, Name3 (2003) Article title, {\it Journal Name}, {\bf 199}, 133-154.
\bibitem[Bag {\it et~al}., 2001]{Bag01} Bag,M., Name2, Name3 (2001) Article title, {\it Journal Name}, {\bf 99}, 33-54.
\bibitem[Yoo \textit{et~al}., 2003]{Yoo03}
Yoo,M.S. \textit{et~al}. (2003) Oxidative stress regulated genes
in nigral dopaminergic neurnol cell: correlation with the known
pathology in Parkinson's disease. \textit{Brain Res. Mol. Brain
Res.}, \textbf{110}(Suppl. 1), 76--84.
\bibitem[Lehmann, 1986]{Leh86}
Lehmann,E.L. (1986) Chapter title. \textit{Book Title}. Vol.~1, 2nd edn. Springer-Verlag, New York.
\bibitem[Crenshaw and Jones, 2003]{Cre03}
Crenshaw, B.,III, and Jones, W.B.,Jr (2003) The future of clinical
cancer management: one tumor, one chip. \textit{Bioinformatics},
doi:10.1093/bioinformatics/btn000.
\bibitem[Auhtor \textit{et~al}. (2000)]{Aut00}
Auhtor,A.B. \textit{et~al}. (2000) Chapter title. In Smith, A.C.
(ed.), \textit{Book Title}, 2nd edn. Publisher, Location, Vol. 1, pp.
???--???.
\bibitem[Bardet, 1920]{Bar20}
Bardet, G. (1920) Sur un syndrome d'obesite infantile avec
polydactylie et retinite pigmentaire (contribution a l'etude des
formes cliniques de l'obesite hypophysaire). PhD Thesis, name of
institution, Paris, France.
\end{thebibliography}
\end{document
Aqui está um link para o arquivo bioinfo.cls. https://www.dropbox.com/s/a65ubzzauuquxvf/bioinfo.cls?dl=0
Responder1
No bioinfo.cls existe um ambiente comentado também denominado abstract.
%\newenvironment{abstract}{%
% \begingroup
% \let\section\absection
% \fontfamily{\sfdefault}\fontsize{10}{12}\sffamily\selectfont
% {\fontseries{b}\selectfont Abstract}\par}
%{\endgroup\bigskip\@afterheading\@afterindentfalse\vskip 12pt plus 3pt minus 1pt}
Esta pode ser uma versão antiga da classe e o modelo fornecido não foi atualizado. Essa é a razão pela qual você deve definir
\abstract{my abstract here}e \corresp{corresponding author}antes do início do documento (conforme mencionado por @Johannes_B)
Portanto você tem que ter esta estrutura:
\history{Received on XXXXX; revised on XXXXX; accepted on XXXXX}
\editor{Associate Editor: XXXXXXX
\corresp{TEST}
\abstract{Short version of your abstract.}
\begin{document}
\firstpage{1}
\begin{abstract}
The long version of your abstract.
\end{abstract}
\maketitle
\section{Introduction}